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OG and cN indirectly interact through the GS/GOGAT cycle. Glutamine is transformed into glutamate by means of 2-OG through the 2-OG amidotransferase (GOGAT) while cN converts glutamate into glutamine through the glutamine synthetase (GS). The importance of the cycle in heterocyst differentiation is twofold. From one side, it constitutes the early one-cell sensor to nitrogen starvation: the absence of cN breaks the cycle down and 2-OG starts to accumulate, whose action leads to the cascade of processes that provoke the differentiation (see Fig. 1). Additionally, later during the differentiation, it processes the cN created by the heterocysts decreasing the levels of 2-OG. The latter is crucial for the formation of the heterocyst pattern (see Fig. 3). Huang X, Dong Y, Zhao J (2004) HetR homodimer is a DNA-binding protein required for heterocyst differentiation, and the DNA-binding activity is inhibited by PatS. P Natl Acad Sci USA 101: 4848–4853. Bailey TL, Boden M, Buske FA, Frith M, Grant CE, Clementi L, Ren J, Li WW, Noble WS: MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009, 37: W202-W208. 10.1093/nar/gkp335. Due to the fast dynamics that HetR and NtcA exhibit, we can approach the treatment of the system by adopting a point of view that follows the slower variables q s and q n. From this viewpoint, the time-evolution of the pair ( q s( t), q n( t)) is considered by assuming that q r and q a instantaneously relax to an equilibrium, which corresponds to a sink ( q r *, q a *) for the fixed pair ( q s( t), q n( t)). Depending on the region of the ( q s, q n)-plane, there are three fixed points (two sinks corresponding to the highest and the lowest concentrations respectively and a saddle in the middle) or one (a sink) for q r and q a (I and II). There are two one-sink regions that are separated from the two-sink region by saddle-node bifurcations (A-F). Sinks and saddles are represented by filled and unfilled circles respectively and arrows indicate the flow of the dynamics. We can then imagine the dynamics of q s and q n as evolving either in the bottom or in the top branch of I. In the two-sink region, both branches are plausible and the history of the dynamics determine the solution (hysteresis effect): a dynamics in a branch will continue in it until experiencing a bifurcation in the ( q r, q a) plane (see Fig. 5 for examples). Young-Robbins SS, Risser DD, Moran JR, Haselkorn R, Callahan SM: Transcriptional regulation of the heterocyst patterning gene patA from Anabaena sp. strain PCC 7120. J Bacteriol. 2010, 192 (18): 4732-4740. 10.1128/JB.00577-10.

Ehira S, Ohmori M (2006) NrrA directly regulates expression of hetR during heterocyst differentiation in the cyanobacterium Anabaena sp. strain PCC 7120. J Bacteriol 188: 8520–8525. pmid:17041048 where L n ′ represents the flux of cN from the exterior of the cell. Assuming that the levels of cN relax rapidly we solve Eq. (5) for the steady state. Substituting in Eq. (4) we find: However, it remained unclear how the nitrogen-fixing cell could ignore its own PatS signal and keep its HetR signal active. HetL – another protein produced by the future nitrogen-fixing cell – could potentially play this role, but how it acts was unknown.In the previous section, we introduced a single cell model for the cyanobacteria reaction to nitrogen-limiting conditions. There we have shown that, for a specific range of parameters, the model exhibits features that would lead to heterocyst development under noisy conditions. Nevertheless, the model should be extended to cyanobacteria chains to account for heterocyst development since, as previously noted, isolated cyanobacteria do not become heterocysts by themselves; the action of the chain is needed to generate heterocysts. Corral Shi Y, Zhao W, Zhang W, Ye Z, Zhao J (2006) Regulation of intracellular free calcium concentration during heterocyst differenciation by HetR and NtcA in Anabaena sp. PCC7120. Proc Nat Acad Sci (USA) 103: 11334–11339. Buikema WJ, Haselkorn R: Characterization of a gene controlling heterocyst differentiation in the cyanobacterium Anabaena 7120. Genes Dev. 1991, 5 (2): 321-330. 10.1101/gad.5.2.321. Videau, P. et al. Expanding the Direct HetR Regulon in Anabaena sp. Strain PCC 7120. J. Bacteriol. 196, 1113–21 (2014).

Wolk CP, Austin S, Bortins J, Galonsky A (1974) Autoradiographic localization of 13N after fixation of 13N-labeled nitrogen gas by a heterocyst-forming blue-gree alga. J Cell Biol 61: 440–453. pmid:4208073 Brown A, Rutenberg A (2012) Reconciling cyanobacterial fixed-nitrogen distributions and transport experiments with quantitative modelling. Phys Biol 9: 016007. pmid:22313598 With the implementation of initiatives under the recently unveiled National Energy Transition Roadmap (NETR) and (now) the HETR, Malaysia is set to be at the forefront of becoming a regional leader in the energy transition and renewable energy industry,” he said at the launch of IGEM 2023. In the bistable region the system behaves as a switch that can be either OFF in a vegetative state (lower branch, with a small production of HetR and NtcA) or ON in a heterocyst state (upper branch, with a high production of HetR and NtcA). A sufficient large perturbation may result in the system crossing the manifold of the saddle and falling into the other stable branch of solutions. The distance between the saddle and the nodes determines the size of the perturbation needed to activate or inactivate the system. Distinct from the previously reported HTH motif 25, the DNA-binding motif of HetR is composed of three helices: the two canonical helices α4 and α5, in addition to an auxiliary helix α10 from the symmetric subunit. Moreover, both the flap and the hood domains adopt novel folds; thus HetR represents a novel transcription factor. The DNA-binding pattern of Anabaena HetRBorthakur PB, Orozco CC, Young-Robbins SS, Haselkorn R, Callahan SM (2005) Inactivation of patS and hetN causes lethal levels of heterocyst differentiation in the filamentous cyanobacterium Anabaena sp. PCC 7120. Mol microbiol 57: 111–123. pmid:15948953 Comparison of the overall structures of hood domain in PatS6−HetR Hood and HetR−DNA complex reveals slight conformational changes (with an RMSD of 0.7 Å over 145 Cα atoms). To understand how these slight signals are amplified and transferred to the DBD, we performed 20-ns molecular dynamics simulations with the HetR−DNA and modeled PatS6−HetR−DNA complex respectively, using the enhanced sampling method 28.

Muro-Pastor AM, Valladares A, Flores E, Herrero A (2002) Mutual dependence of the expression of the cell differentiation regulatory protein HetR and the global nitrogen regulator NtcA during heterocyst development. Mol microbiol 44: 1377–1385. pmid:12068814Wisén S, Jiang F, Bergman B, Mannervik B (1999) Expression and purification of the transcription factor NtcA from the cyanobacterium Anabaena PCC 7120. Protein expres purif 17: 351–357. Zhou R, Cao Z, Zhao J: Characterization of HetR protein turnover in Anabaena sp. PCC 7120. Arch Microbiol. 1998, 169 (5): 417-423. 10.1007/s002030050592.

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